Affinity-matured HLA class II dimers for robust staining of antigen-specific CD4+ T cells

K Sugata, Y Matsunaga, Y Yamashita… - Nature …, 2021 - nature.com
K Sugata, Y Matsunaga, Y Yamashita, M Nakatsugawa, T Guo, L Halabelian, Y Ohashi…
Nature Biotechnology, 2021nature.com
Peptide–major histocompatibility complex (pMHC) multimers enable the detection of antigen-
specific T cells in studies ranging from vaccine efficacy to cancer immunotherapy. However,
this technology is unreliable when applied to pMHC class II for the detection of CD4+ T cells.
Here, using a combination of molecular biological and immunological techniques, we
cloned sequences encoding human leukocyte antigen (HLA)-DP, HLA-DQ and HLA-DR
molecules with enhanced CD4 binding affinity (with a K d of 8.9±1.1 µM between CD4 and …
Abstract
Peptide–major histocompatibility complex (pMHC) multimers enable the detection of antigen-specific T cells in studies ranging from vaccine efficacy to cancer immunotherapy. However, this technology is unreliable when applied to pMHC class II for the detection of CD4+ T cells. Here, using a combination of molecular biological and immunological techniques, we cloned sequences encoding human leukocyte antigen (HLA)-DP, HLA-DQ and HLA-DR molecules with enhanced CD4 binding affinity (with a Kd of 8.9 ± 1.1 µM between CD4 and affinity-matured HLA-DP4) and produced affinity-matured class II dimers that stain antigen-specific T cells better than conventional multimers in both in vitro and ex vivo analyses. Using a comprehensive library of dimers for HLA-DP4, which is the most frequent HLA allele in many ancestry groups, we mapped 103 HLA-DP4-restricted epitopes derived from diverse tumor-associated antigens and cloned the cognate T-cell antigen receptor (TCR) genes from in vitro-stimulated CD4+ T cells. The availability of affinity-matured class II dimers across HLA-DP, HLA-DQ and HLA-DR alleles will aid in the investigation of human CD4+ T-cell responses.
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